STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_1668SMART: Pyrrolo-quinoline quinone; KEGG: sus:Acid_4533 pyrrolo-quinoline quinone. (416 aa)    
Predicted Functional Partners:
Psta_0754
SMART: Pyrrolo-quinoline quinone; KEGG: sec:SC2517 outer membrane protein assembly complex subunit YfgL.
  
     0.775
Psta_1731
PFAM: protein of unknown function DUF214; KEGG: bpy:Bphyt_5006 protein of unknown function DUF214.
  
     0.775
Psta_1678
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: hypothetical protein.
  
     0.774
Psta_1669
Hypothetical protein; KEGG: mxa:MXAN_4062 leucine-rich repeat domain protein.
       0.773
Psta_4496
KEGG: plu:plu3307 hypothetical protein.
  
     0.773
Psta_0174
PFAM: Prenyltransferase/squalene oxidase; KEGG: sfu:Sfum_1989 squalene-hopene cyclase.
  
     0.767
Psta_0712
PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_3629 glycosyl transferase, group 1.
  
     0.765
Psta_0175
PFAM: protein of unknown function DUF116; Polyprenyl synthetase; KEGG: lch:Lcho_3278 polyprenyl synthetase.
  
     0.764
Psta_4497
PFAM: Aldehyde Dehydrogenase; KEGG: plu:plu3306 hypothetical protein.
  
     0.762
Psta_4505
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gur:Gura_0440 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
  
     0.761
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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