STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolD-2ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. (225 aa)    
Predicted Functional Partners:
Psta_4733
PFAM: protein of unknown function DUF214; KEGG: rsq:Rsph17025_3866 TRAP-type C4-dicarboxylate transport system periplasmic component-like protein.
 
 0.977
Psta_0645
PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_0837 lipoprotein releasing system, transmembrane protein, LolC/E family.
  
 0.958
lolD
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
  
 
0.908
Psta_2964
PFAM: protein of unknown function DUF214; KEGG: bac:BamMC406_0228 hypothetical protein.
  
   0.760
Psta_1731
PFAM: protein of unknown function DUF214; KEGG: bpy:Bphyt_5006 protein of unknown function DUF214.
  
   0.759
Psta_1735
PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_1517 hypothetical protein.
  
   0.730
Psta_1729
Prenyltransferase beta subunit-like protein; KEGG: Os01g0150100; hypothetical protein.
       0.668
Psta_3269
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: gbm:Gbem_0845 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA.
    
0.572
Psta_1728
PFAM: thioesterase superfamily protein; KEGG: gme:Gmet_3556 4-hydroxybenzoyl-CoA thioesterase.
       0.554
pheS
TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: cps:CPS_2996 phenylalanyl-tRNA synthetase subunit alpha; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
 
   0.505
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.