STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_1920PFAM: Penicillinase repressor; KEGG: sus:Acid_0898 CopY family transcriptional regulator. (131 aa)    
Predicted Functional Partners:
Psta_1921
PFAM: peptidase M56 BlaR1; KEGG: mxa:MXAN_0189 hypothetical protein.
 
  
 0.961
Psta_3692
PFAM: peptidase M56 BlaR1; KEGG: xcv:XCV0046 BlaR1 peptidase M56 family protein.
 
  
 0.837
Psta_1284
PFAM: peptidase M56 BlaR1; KEGG: scl:sce6609 hypothetical protein.
 
  
 0.832
Psta_3528
TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bch:Bcen2424_5494 heavy metal translocating P- type ATPase.
  
  
 0.734
Psta_4630
PFAM: Heavy metal transport/detoxification protein; KEGG: bcm:Bcenmc03_4777 heavy metal translocating P- type ATPase.
  
  
 0.561
Psta_1919
PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: mxa:MXAN_0040 putative glucose 1- dehydrogenase.
       0.403
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.