Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_1971PFAM: peptidylprolyl isomerase FKBP-type; FKBP-type peptidyl-prolyl isomerase domain protein; KEGG: pca:Pcar_0774 FKBP-type peptidyl-prolyl cis- trans isomerase. (238 aa)    
Predicted Functional Partners:
Psta_0999
PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: wsu:WS0363 peptidyl-prolyl cis-trans isomerase.
  
 0.940
Psta_3235
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 0.940
Psta_1822
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: tcx:Tcr_0449 aromatic hydrocarbon degradation protein.
    
 
 0.845
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
   0.837
Psta_1609
KEGG: Ser/Thr protein phosphatase.
    
 0.828
Psta_2663
PFAM: surface antigen (D15); KEGG: dps:DP0281 outer membrane protein.
   
 
 0.813
Psta_2664
PFAM: surface antigen variable number repeat protein; KEGG: gbm:Gbem_0839 outer membrane protein assembly complex, YaeT protein.
   
 
 0.813
Psta_2464
SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1580 TPR domain-containing protein.
   
 
 0.808
Psta_1749
KEGG: ecn:Ecaj_0812 hypothetical protein.
   
 
 0.785
Psta_4303
KEGG: pca:Pcar_1006 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein.
    
   0.779
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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