Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_1997KEGG: jan:Jann_1686 hypothetical protein. (223 aa)    
Predicted Functional Partners:
Psta_1995
KEGG: sus:Acid_1003 putative L-fucose isomerase.
       0.697
Psta_1996
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SM_b20662 putative oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.697
Psta_1994
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: PBS lyase HEAT domain protein repeat- containing protein; KEGG: azo:azo2148 putative L-sorbosone dehydrogenase.
       0.461
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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