STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2007SMART: AAA ATPase; KEGG: cps:CPS_5029 putative general secretion pathway protein A. (524 aa)    
Predicted Functional Partners:
Psta_3842
PFAM: lipopolysaccharide biosynthesis protein; KEGG: ppd:Ppro_2880 lipopolysaccharide biosynthesis.
 
     0.595
Psta_3356
SMART: AAA ATPase; KEGG: glo:Glov_2122 AAA ATPase.
  
     0.567
Psta_2428
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: aeh:Mlg_1873 diguanylate cyclase.
  
     0.550
Psta_0350
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; GGDEF domain containing protein; KEGG: aeh:Mlg_1873 diguanylate cyclase.
  
     0.527
Psta_2008
KEGG: scl:sce8523 protein kinase.
       0.527
Psta_4016
PFAM: peptidase A24A prepilin type IV; KEGG: glo:Glov_2160 peptidase A24A domain protein.
 
    0.516
Psta_3682
PFAM: Metal-dependent hydrolase HDOD; metal- dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: glo:Glov_3214 metal dependent phosphohydrolase.
  
     0.491
Psta_3671
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: rso:RS00346 general secretion pathway GspG-like transmembrane protein.
  
     0.481
Psta_3567
PFAM: lipopolysaccharide biosynthesis protein; KEGG: ppd:Ppro_2880 lipopolysaccharide biosynthesis.
 
     0.461
Psta_4268
KEGG: shn:Shewana3_0715 putative chemotaxis protein CheX.
  
     0.452
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.