Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Psta_2091PFAM: peptidase domain protein; KEGG: sus:Acid_5040 hypothetical protein. (832 aa)    
Predicted Functional Partners:
Psta_2092
PFAM: protein of unknown function DUF1549; Ig domain protein group 2 domain protein; KEGG: sus:Acid_5039 hypothetical protein.
 
     0.889
Psta_2093
PFAM: Planctomycete cytochrome C; WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: sus:Acid_5038 WD-40 repeat-containing protein.
 
     0.855
Psta_2354
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein.
 
     0.783
Psta_3533
PFAM: protein of unknown function DUF1549; Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; KEGG: sus:Acid_5709 hypothetical protein.
 
     0.780
Psta_2090
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_5041 hypothetical protein.
 
     0.778
Psta_2382
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein.
  
     0.775
Psta_4125
KEGG: dal:Dalk_0344 cycloartenol synthase-like protein.
  
     0.772
Psta_2467
Hypothetical protein; KEGG: ank:AnaeK_3798 FHA domain containing protein.
  
     0.771
Psta_2910
Hypothetical protein; KEGG: cti:RALTA_B1983 squalene hopene cyclase.
  
     0.770
Psta_2273
PFAM: Protein of unknown function DUF1588; PA14 domain protein; Protein of unknown function DUF1592; SMART: PA14 domain protein; KEGG: scl:sce1022 hypothetical protein.
  
     0.769
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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