Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_2139Type II secretory pathway component PulF-like protein; KEGG: sat:SYN_01550 general secretion pathway protein F. (348 aa)    
Predicted Functional Partners:
Psta_2138
PFAM: type II secretion system protein; KEGG: xau:Xaut_2108 type II secretion system protein.
    
  0.976
Psta_3672
PFAM: type II secretion system protein; KEGG: sat:SYN_01550 general secretion pathway protein F.
  
  
  0.912
Psta_2137
PFAM: type II secretion system protein E; KEGG: cak:Caul_2089 general secretory pathway protein E.
  
   0.767
Psta_2140
PFAM: type II secretion system protein; KEGG: rme:Rmet_3394 general secretion pathway protein F.
       0.578
Psta_2141
Hypothetical protein.
       0.578
Psta_2142
Hypothetical protein.
       0.578
Psta_2143
Hypothetical protein.
       0.578
Psta_1745
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB-like protein; KEGG: glo:Glov_1280 general secretory pathway protein E.
  
   0.545
Psta_0018
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: noc:Noc_2672 DNA internalization-related competence protein ComEC/Rec2.
   
  
 0.516
Psta_2668
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: wsu:WS1872 single-strand DNA-binding protein.
  
    0.478
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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