STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2139Type II secretory pathway component PulF-like protein; KEGG: sat:SYN_01550 general secretion pathway protein F. (348 aa)    
Predicted Functional Partners:
Psta_2137
PFAM: type II secretion system protein E; KEGG: cak:Caul_2089 general secretory pathway protein E.
  
   0.780
Psta_2138
PFAM: type II secretion system protein; KEGG: xau:Xaut_2108 type II secretion system protein.
       0.773
Psta_2140
PFAM: type II secretion system protein; KEGG: rme:Rmet_3394 general secretion pathway protein F.
       0.578
Psta_2141
Hypothetical protein.
       0.578
Psta_2142
Hypothetical protein.
       0.578
Psta_2143
Hypothetical protein.
       0.578
Psta_1745
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB-like protein; KEGG: glo:Glov_1280 general secretory pathway protein E.
  
   0.572
Psta_0018
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: noc:Noc_2672 DNA internalization-related competence protein ComEC/Rec2.
   
  
 0.533
Psta_0532
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: aba:Acid345_1392 type II secretion system protein E.
   
   0.502
Psta_0534
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: mxa:MXAN_5788 type IV-A pilus assembly ATPase PilB.
   
   0.502
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.