Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_2140PFAM: type II secretion system protein; KEGG: rme:Rmet_3394 general secretion pathway protein F. (419 aa)    
Predicted Functional Partners:
Psta_2138
PFAM: type II secretion system protein; KEGG: xau:Xaut_2108 type II secretion system protein.
 
     0.870
Psta_2141
Hypothetical protein.
       0.773
Psta_2142
Hypothetical protein.
       0.773
Psta_2143
Hypothetical protein.
       0.773
Psta_4310
KEGG: hypothetical protein.
  
     0.726
Psta_2145
PFAM: protein of unknown function DUF1559; KEGG: protein with central transmembrane domain followed by gly-met-pro repeat.
 
    0.703
Psta_2137
PFAM: type II secretion system protein E; KEGG: cak:Caul_2089 general secretory pathway protein E.
  
   0.698
Psta_4737
PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE-like protein.
  
    0.625
Psta_2139
Type II secretory pathway component PulF-like protein; KEGG: sat:SYN_01550 general secretion pathway protein F.
       0.578
Psta_0943
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mmw:Mmwyl1_1869 helix-turn-helix domain- containing protein.
  
     0.576
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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