STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2194PFAM: aminotransferase class V; KEGG: bpd:BURPS668_A1215 selenocysteine lyase. (389 aa)    
Predicted Functional Partners:
Psta_1316
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: SUF system FeS assembly protein, NifU family.
 
 
 0.970
Psta_4544
FeS assembly ATPase SufC; KEGG: bat:BAS4851 ABC transporter, ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.902
Psta_4542
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: bha:BH3470 hypothetical protein.
 
 
 0.836
Psta_4543
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bsu:BSU32670 hypothetical protein.
 
 
 0.836
Psta_0239
Cysteine desulfurase family protein; KEGG: aba:Acid345_4166 cysteine desulphurase related; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V.
  
     0.707
Psta_2195
Hypothetical protein.
     
 0.592
Psta_2196
PFAM: protein of unknown function DUF486; KEGG: pap:PSPA7_3751 hypothetical protein.
       0.427
Psta_2193
Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: bov:BOV_1217 CBS domain-containing protein.
       0.418
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.