Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Psta_2236PFAM: protein of unknown function DUF323; KEGG: sus:Acid_6144 hypothetical protein. (396 aa)    
Predicted Functional Partners:
Psta_3370
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_2550 oxidoreductase domain- containing protein.
  
     0.708
Psta_4373
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_2457 hypothetical protein.
  
    0.680
Psta_4609
PFAM: protein of unknown function DUF323; KEGG: mxa:MXAN_7471 hypothetical protein.
  
     0.638
Psta_4484
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_6145 oxidoreductase domain- containing protein.
  
     0.560
Psta_1431
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: protein of unknown function DUF1037; KEGG: bcm:Bcenmc03_6969 hypothetical protein.
  
     0.554
Psta_2955
TIGRFAM: heme-binding protein; KEGG: sus:Acid_3123 putative heme-binding protein.
  
     0.545
Psta_1366
PFAM: protein of unknown function DUF1080; KEGG: swi:Swit_1630 hypothetical protein.
  
 
   0.525
Psta_3792
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.
  
     0.447
Psta_2237
PFAM: surface presentation of antigens (SPOA) protein; KEGG: rso:RSp0377 flagellar motor switch protein FliN.
       0.429
Psta_3568
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.
  
     0.406
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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