STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2265Transcriptional regulator protein-like protein; KEGG: glo:Glov_0382 helix-turn-helix type 11 domain protein. (342 aa)    
Predicted Functional Partners:
Psta_2654
SMART: von Willebrand factor type A; KEGG: Os04g0438100; hypothetical protein.
  
     0.670
Psta_2061
PFAM: Cna B domain protein; KEGG: gme:Gmet_2043 hypothetical protein.
  
     0.615
Psta_2103
TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: bca:BCE_3690 hypothetical protein.
  
     0.574
Psta_3644
Hypothetical protein; KEGG: late embryogenesis abundant protein-related / LEA protein-related.
  
     0.522
Psta_4036
Hypothetical protein; KEGG: HYR10; hyphally-regulated cell wall protein.
  
     0.517
Psta_3611
KEGG: hypothetical protein.
  
     0.506
Psta_1321
Hypothetical protein; KEGG: mxa:MXAN_6474 putative ABC transporter, permease protein.
  
     0.494
Psta_2214
KEGG: sfu:Sfum_4007 hypothetical protein.
  
     0.492
Psta_2264
PFAM: protein of unknown function UPF0102; KEGG: dal:Dalk_4642 protein of unknown function UPF0102; Belongs to the UPF0102 family.
       0.486
Psta_3599
PFAM: oxidoreductase domain protein; KEGG: gdj:Gdia_2839 oxidoreductase domain protein.
  
     0.471
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.