Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Psta_2265Transcriptional regulator protein-like protein; KEGG: glo:Glov_0382 helix-turn-helix type 11 domain protein. (342 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.749
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.734
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.718
Psta_3991
PFAM: RNA polymerase alpha subunit domain protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sde:Sde_0984 DNA-directed RNA polymerase subunit alpha.
  
 
   0.718
Psta_2654
SMART: von Willebrand factor type A; KEGG: Os04g0438100; hypothetical protein.
  
     0.670
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.658
Psta_2061
PFAM: Cna B domain protein; KEGG: gme:Gmet_2043 hypothetical protein.
  
     0.615
Psta_2103
TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: bca:BCE_3690 hypothetical protein.
  
     0.574
Psta_3644
Hypothetical protein; KEGG: late embryogenesis abundant protein-related / LEA protein-related.
  
     0.522
Psta_4036
Hypothetical protein; KEGG: HYR10; hyphally-regulated cell wall protein.
  
     0.517
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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