Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_2425PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_2605 hypothetical protein. (233 aa)    
Predicted Functional Partners:
Psta_3882
Hypothetical protein; KEGG: rme:Rmet_0747 putative membrane-bound dehydrogenase oxidoreductase protein.
 
     0.887
Psta_3792
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.
 
     0.882
Psta_1366
PFAM: protein of unknown function DUF1080; KEGG: swi:Swit_1630 hypothetical protein.
 
    0.840
Psta_1172
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.
  
     0.772
Psta_2463
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_0701 hypothetical protein.
  
     0.771
Psta_3568
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.
  
     0.771
Psta_0855
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_6142 hypothetical protein.
  
     0.770
Psta_3817
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_0701 hypothetical protein.
  
     0.768
Psta_1344
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_4919 hypothetical protein.
  
     0.755
Psta_3864
KEGG: ccs:CCNA_02102 glycosyl hydrolase.
 
     0.753
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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