STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2452PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: aba:Acid345_1339 hypothetical protein. (771 aa)    
Predicted Functional Partners:
Psta_3232
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: gbm:Gbem_0244 protease Do.
 
     0.772
Psta_3927
PFAM: PDZ/DHR/GLGF domain protein; peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: maq:Maqu_2259 protease Do.
  
     0.766
Psta_2725
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: swi:Swit_5274 protease Do.
  
     0.763
Psta_2724
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: azo:azo3337 serine protease AlgW.
  
     0.729
Psta_2424
Hypothetical protein; KEGG: afw:Anae109_0259 TPR repeat-containing protein.
  
     0.619
Psta_3474
PFAM: Kelch repeat-containing protein; Kelch repeat protein; SMART: Kelch repeat-containing protein; KEGG: scl:sce5357 hypothetical protein.
  
     0.578
Psta_3165
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_3710 xylose isomerase domain- containing protein.
  
     0.541
Psta_2450
PFAM: Cold-shock protein DNA-binding; KEGG: baa:BA_4086 cold shock RNA binding domain of the OB fold.
     
 0.526
Psta_1281
KEGG: pzu:PHZ_c2448 hypothetical protein.
  
     0.515
Psta_2451
Hypothetical protein; KEGG: rsh:Rsph17029_3203 superfamily I DNA/RNA helicase.
       0.492
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.