STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2464SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1580 TPR domain-containing protein. (638 aa)    
Predicted Functional Partners:
Psta_2664
PFAM: surface antigen variable number repeat protein; KEGG: gbm:Gbem_0839 outer membrane protein assembly complex, YaeT protein.
 
 
 0.925
Psta_2663
PFAM: surface antigen (D15); KEGG: dps:DP0281 outer membrane protein.
  
 
 0.901
Psta_2467
Hypothetical protein; KEGG: ank:AnaeK_3798 FHA domain containing protein.
 
     0.836
Psta_2465
PFAM: MotA/TolQ/ExbB proton channel; KEGG: pca:Pcar_1505 MotA/TolQ/ExbB proton channel family protein.
 
  
 0.724
Psta_2716
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hne:HNE_2633 putative TonB system transport protein ExbD.
 
  
 0.710
Psta_0478
TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1550; KEGG: acp:A2cp1_4421 hypothetical protein.
 
     0.704
Psta_2185
PFAM: GAF domain protein; KEGG: dol:Dole_0618 putative phytochrome sensor protein.
  
     0.669
Psta_2206
KEGG: hypothetical protein.
 
  
 0.667
Psta_0136
Hypothetical protein; KEGG: pat:Patl_3492 twin-arginine translocation pathway signal.
  
     0.664
Psta_2466
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pat:Patl_4069 biopolymer transport protein ExbD/TolR.
 
  
 0.654
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.