Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Psta_2467Hypothetical protein; KEGG: ank:AnaeK_3798 FHA domain containing protein. (622 aa)    
Predicted Functional Partners:
Psta_2464
SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1580 TPR domain-containing protein.
 
     0.832
Psta_2466
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pat:Patl_4069 biopolymer transport protein ExbD/TolR.
       0.781
Psta_4125
KEGG: dal:Dalk_0344 cycloartenol synthase-like protein.
  
     0.774
Psta_2091
PFAM: peptidase domain protein; KEGG: sus:Acid_5040 hypothetical protein.
  
     0.771
Psta_4287
KEGG: scl:sce7370 hypothetical protein.
  
     0.758
Psta_2206
KEGG: hypothetical protein.
  
     0.756
Psta_0136
Hypothetical protein; KEGG: pat:Patl_3492 twin-arginine translocation pathway signal.
  
     0.755
Psta_2185
PFAM: GAF domain protein; KEGG: dol:Dole_0618 putative phytochrome sensor protein.
  
     0.755
Psta_3225
KEGG: sus:Acid_6438 hypothetical protein.
  
     0.755
Psta_2092
PFAM: protein of unknown function DUF1549; Ig domain protein group 2 domain protein; KEGG: sus:Acid_5039 hypothetical protein.
  
     0.754
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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