STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2480PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_4909 xylose isomerase domain- containing protein. (280 aa)    
Predicted Functional Partners:
Psta_2167
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: hypothetical protein.
  
     0.702
Psta_1802
Outer membrane protein-like protein; KEGG: hypothetical protein LOC758923.
  
     0.671
Psta_1791
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: GG16353 gene product from transcript GG16353- RA.
  
     0.631
Psta_2481
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_7066 oxidoreductase domain- containing protein.
 
    0.629
Psta_3667
Hypothetical protein; KEGG: gme:Gmet_3371 general secretion pathway protein K.
  
     0.579
Psta_2041
PFAM: type II and III secretion system protein; KEGG: swp:swp_2065 type II and III secretion system protein:NolW-like protein; Belongs to the bacterial secretin family.
  
     0.568
Psta_4287
KEGG: scl:sce7370 hypothetical protein.
  
     0.547
Psta_2099
KEGG: outer membrane efflux protein.
  
     0.506
Psta_2387
Hypothetical protein; KEGG: trans-sialidase.
  
     0.503
Psta_4310
KEGG: hypothetical protein.
  
     0.495
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.