STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2481PFAM: oxidoreductase domain protein; KEGG: sus:Acid_7066 oxidoreductase domain- containing protein. (598 aa)    
Predicted Functional Partners:
Psta_2482
Hypothetical protein.
       0.793
Psta_1437
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bha:BH1248 NADH-dependent dyhydrogenase.
  
     0.749
Psta_3167
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: rle:RL0824 putative oxidoreductase.
  
     0.728
Psta_1288
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bra:BRADO0445 putative oxidoreductase/dehydrogenase protein.
  
     0.725
Psta_3599
PFAM: oxidoreductase domain protein; KEGG: gdj:Gdia_2839 oxidoreductase domain protein.
  
     0.707
Psta_2654
SMART: von Willebrand factor type A; KEGG: Os04g0438100; hypothetical protein.
  
     0.689
Psta_4484
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_6145 oxidoreductase domain- containing protein.
  
     0.635
Psta_2388
KEGG: ank:AnaeK_0667 hypothetical protein.
  
    0.631
Psta_2480
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_4909 xylose isomerase domain- containing protein.
 
    0.629
Psta_2103
TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: bca:BCE_3690 hypothetical protein.
  
     0.608
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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