STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2496TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: mgm:Mmc1_3561 TonB family protein. (339 aa)    
Predicted Functional Partners:
Psta_2050
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pca:Pcar_0454 TonB-dependent outer membrane receptor for cobalamin and Fe transport.
 
 
 
 0.893
Psta_0400
KEGG: hypothetical protein.
    
   0.851
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.757
Psta_2465
PFAM: MotA/TolQ/ExbB proton channel; KEGG: pca:Pcar_1505 MotA/TolQ/ExbB proton channel family protein.
 
 
 0.563
Psta_2882
PFAM: MotA/TolQ/ExbB proton channel; KEGG: aeh:Mlg_1436 MotA/TolQ/ExbB proton channel.
 
 
 0.559
Psta_2498
KEGG: sfu:Sfum_3239 hypothetical protein.
       0.555
Psta_1989
PFAM: MotA/TolQ/ExbB proton channel; KEGG: pmy:Pmen_1612 MotA/TolQ/ExbB proton channel.
 
 
 0.544
Psta_0965
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: asa:ASA_4320 biopolymer transport protein.
  
 
 0.528
Psta_0966
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: psa:PST_2637 biopolymer transport protein ExbD/TolR family.
  
 
 0.528
Psta_1982
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dal:Dalk_3599 biopolymer transport protein ExbD/TolR.
  
 
 0.528
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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