STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2515PFAM: lipolytic protein G-D-S-L family; KEGG: predicted protein. (245 aa)    
Predicted Functional Partners:
Psta_2307
SMART: Parallel beta-helix repeat; KEGG: rru:Rru_A1485 parallel beta-helix repeat- containing protein.
 
   0.795
Psta_2514
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: sus:Acid_2651 putative O-antigen related protein.
 
   
 0.734
Psta_3505
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sde:Sde_1647 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.729
Psta_1430
PFAM: FG-GAP repeat protein; KEGG: dol:Dole_1756 FG-GAP repeat-containing protein.
  
 
   0.727
Psta_1165
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mpo:Mpop_3919 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
     0.673
Psta_0348
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein.
  
     0.663
Psta_3095
Hypothetical protein; KEGG: nmu:Nmul_A2303 peptidase S9, prolyl oligopeptidase active site region.
  
     0.629
Psta_1618
Hypothetical protein; KEGG: scl:sce2260 putative secreted protein.
  
     0.627
Psta_3096
PFAM: Acetyl xylan esterase; KEGG: sus:Acid_2990 acetyl xylan esterase.
  
     0.612
Psta_1492
KEGG: hypothetical protein.
  
    0.610
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.