STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2536SMART: PA14 domain protein; KEGG: sus:Acid_4385 hypothetical protein. (1447 aa)    
Predicted Functional Partners:
Psta_1848
Hypothetical protein; KEGG: pau:PA14_41240 ATP-dependent Clp protease proteolytic subunit.
  
     0.764
Psta_1281
KEGG: pzu:PHZ_c2448 hypothetical protein.
  
     0.754
Psta_0085
Dipeptidylaminopeptidase/acylaminoacyl-peptidase -like protein; KEGG: swp:swp_4481 prolyl oligopeptidase family protein.
  
     0.751
Psta_0124
KEGG: swp:swp_0420 hypothetical protein.
  
     0.748
Psta_0521
PFAM: von Willebrand factor type A; KEGG: sfu:Sfum_1496 hypothetical protein.
  
     0.748
Psta_2652
KEGG: neu:NE1230 hypothetical protein.
  
     0.746
Psta_0896
TIGRFAM: heme-binding protein; KEGG: sus:Acid_3123 putative heme-binding protein.
  
     0.739
Psta_3456
KEGG: hypothetical protein.
  
     0.707
Psta_1934
PFAM: peptidase domain protein; cellulosome protein dockerin type I; KEGG: eli:ELI_06165 hypothetical protein.
  
     0.696
Psta_2637
TIGRFAM: heme-binding protein; membrane-bound dehydrogenase domain protein; KEGG: met:M446_1682 putative glucose/sorbosone dehydrogenase.
  
     0.692
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.