STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2645ABC-type sugar transport system periplasmic component-like protein; KEGG: scl:sce4030 ribose ABC transporter periplasmic-binding protein. (376 aa)    
Predicted Functional Partners:
Psta_2644
PFAM: inner-membrane translocator; KEGG: ribose ABC transporter; K10440 ribose transport system permease protein.
 
 0.997
Psta_2643
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: smd:Smed_4316 ABC transporter related.
 
 0.994
Psta_2540
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sgl:SG0613 sugar ABC transporter permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 0.985
Psta_4529
KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Forkhead-associated protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; Forkhead-associated protein; PAS domain containing protein.
   
 
 0.944
Psta_1412
KEGG: rru:Rru_A2361 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein.
   
 
 0.942
Psta_4095
Histidine kinase; KEGG: mmr:Mmar10_2521 periplasmic sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.
   
 
 0.932
Psta_4267
Histidine kinase; KEGG: pla:Plav_1427 integral membrane sensor signal transduction histidine kinase; TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; ATP- binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein.
   
 
 0.932
Psta_2541
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_3419 periplasmic binding protein/LacI transcriptional regulator.
  
  
 
0.926
Psta_0819
KEGG: dal:Dalk_3918 multi-sensor hybrid histidine kinase; TIGRFAM: ammonium transporter; PAS sensor protein; PFAM: Rh family protein/ammonium transporter; ATP- binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; response regulator receiver.
 
 
 0.648
Psta_1999
KEGG: mag:amb1862 hypothetical protein.
  
     0.613
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.