STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2684PFAM: Phytanoyl-CoA dioxygenase; KEGG: similar to Y105C5B.9. (293 aa)    
Predicted Functional Partners:
Psta_3174
PFAM: Phytanoyl-CoA dioxygenase; KEGG: similar to predicted protein.
  
     0.752
Psta_2660
Hypothetical protein; KEGG: NACA, TEBP; nascent polypeptide-associated complex alpha subunit.
  
     0.639
Psta_3475
TIGRFAM: heme-binding protein; KEGG: aba:Acid345_0291 cytochrome c, class I.
  
     0.482
Psta_1928
TIGRFAM: heme-binding protein; PFAM: alpha-L-rhamnosidase domain protein; KEGG: bba:Bd0989 L-sorbosone dehydrogenase.
  
     0.465
Psta_1669
Hypothetical protein; KEGG: mxa:MXAN_4062 leucine-rich repeat domain protein.
  
     0.451
Psta_1893
acetyl-CoA acetyltransferase; KEGG: esa:ESA_03715 3-ketoacyl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.446
Psta_2448
KEGG: kpe:KPK_0844 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.446
Psta_2685
KEGG: sus:Acid_1173 alpha/beta hydrolase.
  
    0.444
Psta_1940
KEGG: predicted protein; K03006 DNA-directed RNA polymerase II subunit A.
  
     0.442
Psta_0659
Hypothetical protein; KEGG: myosin heavy chain.
  
     0.426
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.