STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2819KEGG: ppd:Ppro_2173 hypothetical protein. (523 aa)    
Predicted Functional Partners:
Psta_2818
PFAM: peptidase C39 bacteriocin processing; KEGG: hhe:HH0187 hypothetical protein.
 
 
   0.952
Psta_2820
KEGG: hypothetical protein.
       0.546
Psta_3793
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: maq:Maqu_3387 peptidase S1 and S6, chymotrypsin/Hap.
  
     0.523
Psta_2821
PFAM: pseudouridine synthase; KEGG: sfu:Sfum_1153 pseudouridine synthase.
 
     0.498
Psta_2321
DNA repair ATPase-like protein; KEGG: hypothetical protein.
  
     0.491
Psta_2210
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dal:Dalk_2207 tetratricopeptide TPR_2 repeat protein.
 
 
   0.461
Psta_2934
SMART: PDZ/DHR/GLGF domain protein; KEGG: sus:Acid_4385 hypothetical protein.
  
     0.460
Psta_3569
KEGG: hypothetical protein.
  
     0.417
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.