Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psta_2844PFAM: LmbE family protein; KEGG: sus:Acid_4805 LmbE family protein. (253 aa)    
Predicted Functional Partners:
Psta_1372
PFAM: LmbE family protein; KEGG: smd:Smed_1698 LmbE family protein.
  
     0.758
Psta_2531
KEGG: sus:Acid_4591 hypothetical protein.
  
    0.558
Psta_2845
KEGG: dal:Dalk_5199 hypothetical protein.
       0.476
Psta_3300
KEGG: aba:Acid345_3256 magnesium protoporphyrin chelatase, putative.
  
     0.456
Psta_0633
Hypothetical protein; KEGG: bur:Bcep18194_B1392 poly(3-hydroxyalkanoate) depolymerase.
  
     0.427
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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