Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Psta_2897PFAM: HpcH/HpaI aldolase; KEGG: sme:SMc02778 putative hydroxyacid aldolase protein; Belongs to the HpcH/HpaI aldolase family. (265 aa)    
Predicted Functional Partners:
Psta_1781
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: mno:Mnod_6583 D-galactarate dehydratase/altronate hydrolase domain protein.
    0.648
Psta_2898
PFAM: protein of unknown function UPF0261; KEGG: mes:Meso_3719 hypothetical protein.
       0.565
Psta_1755
KEGG: sus:Acid_5177 demethylmenaquinone methyltransferase-like protein.
 
   
 0.482
Psta_2896
KEGG: sat:SYN_02206 hypothetical protein.
       0.415
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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