Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Psta_2902Hypothetical protein. (746 aa)    
Predicted Functional Partners:
Psta_2901
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_6475 ABC transporter, ATP-binding protein.
 
     0.897
Psta_4287
KEGG: scl:sce7370 hypothetical protein.
  
     0.775
Psta_4021
PFAM: ABC-2 type transporter; KEGG: scl:sce7370 hypothetical protein.
  
     0.770
Psta_2185
PFAM: GAF domain protein; KEGG: dol:Dole_0618 putative phytochrome sensor protein.
  
     0.764
Psta_2131
PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: scl:sce5903 hypothetical protein.
  
     0.756
Psta_2388
KEGG: ank:AnaeK_0667 hypothetical protein.
  
     0.753
Psta_2128
PFAM: von Willebrand factor type A; KEGG: scl:sce0468 hypothetical protein.
  
     0.752
Psta_0859
Putative phytochrome sensor protein; PFAM: GAF domain protein; KEGG: mgm:Mmc1_2199 membrane-fusion protein-like protein.
  
     0.749
Psta_2032
Hypothetical protein; KEGG: similar to Stretchin-Mlck CG18255-PA, isoform A.
  
     0.745
Psta_2387
Hypothetical protein; KEGG: trans-sialidase.
  
     0.741
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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