Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Psta_2964PFAM: protein of unknown function DUF214; KEGG: bac:BamMC406_0228 hypothetical protein. (458 aa)    
Predicted Functional Partners:
Psta_2962
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2407 ABC transporter-related protein.
 
   0.925
Psta_2963
PFAM: protein of unknown function DUF214; KEGG: scl:sce6716 putative ABC transport system permease protein.
 
  
 0.896
Psta_1226
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bvi:Bcep1808_0286 ABC transporter related.
 
   0.865
Psta_4732
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_7937 ABC transporter related.
  
   0.860
lolD
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
   0.798
Psta_2961
PFAM: secretion protein HlyD family protein; KEGG: sus:Acid_1656 RND family efflux transporter MFP subunit.
 
     0.790
lolD-2
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
   0.762
Psta_1734
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_2178 ABC transporter-related protein.
  
   0.755
Psta_3091
KEGG: sde:Sde_2784 heterocyst specific ABC- transporter, ATP-binding subunit DevA-like; TIGRFAM: ABC exporter ATP-binding subunit, DevA family; PFAM: ABC transporter related; SMART: AAA ATPase.
  
   0.712
Psta_0475
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA1400 ABC transporter, ATP-binding protein.
  
   0.684
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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