STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_3005RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: sus:Acid_0793 ECF subfamily RNA polymerase sigma-24 factor. (192 aa)    
Predicted Functional Partners:
Psta_1408
Glucuronate isomerase-like protein; KEGG: hypothetical protein.
  
     0.683
Psta_3949
KEGG: sus:Acid_4453 transmembrane prediction; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.561
Psta_4310
KEGG: hypothetical protein.
  
     0.486
Psta_4661
PFAM: protein of unknown function DUF1573; KEGG: protein of unknown function DUF1573.
  
     0.432
Psta_3175
GAF sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Forkhead-associated protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; Forkhead-associated protein; histidine kinase A domain protein; GAF domain protein; KEGG: scl:sce0793 two-component histidine kinase.
  
  
 0.424
Psta_1502
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: aba:Acid345_2954 transcriptional regulator, MarR family.
  
     0.411
Psta_3932
PFAM: beta-lactamase domain protein; KEGG: eba:ebA3647 putative beta lactamase protein.
  
     0.409
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.