STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_3033KEGG: aba:Acid345_3257 von Willebrand factor, type A. (570 aa)    
Predicted Functional Partners:
Psta_3300
KEGG: aba:Acid345_3256 magnesium protoporphyrin chelatase, putative.
    0.827
Psta_3521
KEGG: Os05g0516400; hypothetical protein.
  
     0.622
Psta_4626
Hypothetical protein; KEGG: lpn:lpg1028 chemiosmotic efflux system C protein B.
  
     0.603
Psta_3034
TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: hypothetical protein.
       0.574
Psta_1250
PFAM: permease; KEGG: pca:Pcar_0353 permease.
  
     0.563
Psta_1802
Outer membrane protein-like protein; KEGG: hypothetical protein LOC758923.
  
     0.526
Psta_3666
PFAM: Fimbrial assembly family protein; KEGG: sde:Sde_1131 hypothetical protein.
  
     0.514
Psta_4505
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gur:Gura_0440 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
  
     0.510
Psta_0064
KEGG: bat:BAS3281 hypothetical protein.
  
     0.508
Psta_0416
Putative transcriptional activator, TenA family; KEGG: hypothetical protein.
   
   0.502
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.