STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_3118PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: gdi:GDI2772 putative alkyl hydroperoxide reductase. (189 aa)    
Predicted Functional Partners:
Psta_4195
PFAM: cytochrome c assembly protein; KEGG: acp:A2cp1_1853 cytochrome c assembly protein.
 
  
 0.516
Psta_3119
Hypothetical protein.
       0.503
Psta_3452
KEGG: bba:Bd0821 hypothetical protein.
  
     0.483
Psta_4532
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_5041 hypothetical protein.
  
     0.472
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.455
Psta_1634
SMART: Pyrrolo-quinoline quinone; KEGG: cps:CPS_4249 outer membrane protein assembly complex subunit YfgL.
  
     0.448
Psta_2975
KEGG: hch:HCH_02245 hypothetical protein.
  
     0.423
Psta_3337
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: scl:sce0363 protein kinase.
  
     0.401
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.