Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Psta_3172PFAM: Basic Secretory Protein; KEGG: smt:Smal_3351 hypothetical protein. (244 aa)    
Predicted Functional Partners:
Psta_1282
KEGG: hypothetical protein.
  
     0.639
Psta_2273
PFAM: Protein of unknown function DUF1588; PA14 domain protein; Protein of unknown function DUF1592; SMART: PA14 domain protein; KEGG: scl:sce1022 hypothetical protein.
  
     0.582
Psta_1014
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: hypothetical protein.
  
     0.570
Psta_2382
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein.
  
     0.556
Psta_2274
PFAM: protein of unknown function DUF1552; KEGG: scl:sce0554 putative secreted protein.
  
     0.505
Psta_0780
Hypothetical protein; KEGG: sus:Acid_2373 calcium-binding EF-hand- containing protein.
  
     0.503
Psta_4308
KEGG: met:M446_2019 hypothetical protein.
  
     0.476
Psta_0395
KEGG: IPT/TIG domain containing protein.
  
     0.472
Psta_1258
PFAM: dihydrodipicolinate synthetase; KEGG: rle:pRL100268 putative dihydrodipicolinate synthase; Belongs to the DapA family.
  
     0.472
Psta_2092
PFAM: protein of unknown function DUF1549; Ig domain protein group 2 domain protein; KEGG: sus:Acid_5039 hypothetical protein.
  
     0.468
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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