STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_3205SMART: WD-40 repeat protein; KEGG: hypothetical protein. (1023 aa)    
Predicted Functional Partners:
Psta_3991
PFAM: RNA polymerase alpha subunit domain protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sde:Sde_0984 DNA-directed RNA polymerase subunit alpha.
   
  0.836
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.605
Psta_0975
KEGG: nar:Saro_3164 glucose-methanol-choline oxidoreductase.
    
  0.601
Psta_0261
PFAM: type III restriction protein res subunit; KEGG: gur:Gura_4389 type III restriction enzyme, res subunit.
    
  0.504
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
  0.503
Psta_4010
PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: dds:Ddes_2005 anti-sigma-28 factor, FlgM.
  
   0.491
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.489
Psta_0042
SMART: helicase c2; DEAD-like helicase; KEGG: gme:Gmet_3167 helicase C2.
    
  0.471
Psta_0883
PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: dde:Dde_1781 metallo-beta-lactamase family protein.
    
  0.464
Psta_2038
KEGG: mxa:MXAN_5915 hypothetical protein.
    
  0.464
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.