Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_3229SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; KEGG: slo:Shew_2289 glycosy hydrolase family protein. (421 aa)    
Predicted Functional Partners:
Psta_3228
Hypothetical protein; KEGG: UTRN; utrophin; K10366 dystrophin.
       0.804
Psta_3230
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: gsu:GSU0080 protease DegQ.
       0.670
Psta_3227
Hypothetical protein; KEGG: trans-sialidase.
       0.623
Psta_3231
SMART: PDZ/DHR/GLGF domain protein; KEGG: ajs:Ajs_0784 peptidase S1 and S6, chymotrypsin/Hap.
       0.553
Psta_0400
KEGG: hypothetical protein.
    
   0.547
Psta_3226
KEGG: hypothetical protein.
       0.534
Psta_3232
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: gbm:Gbem_0244 protease Do.
       0.469
Psta_2050
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pca:Pcar_0454 TonB-dependent outer membrane receptor for cobalamin and Fe transport.
   
 
 0.441
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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