STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_3232PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: gbm:Gbem_0244 protease Do. (652 aa)    
Predicted Functional Partners:
Psta_1852
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: reh:H16_B0159 trypsin-like serine protease, contains C-terminal PDZ domain.
 
     0.780
Psta_2192
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: mxa:MXAN_4330 periplasmic serine protease, DO/DeqQ family.
  
     0.774
Psta_2452
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: aba:Acid345_1339 hypothetical protein.
 
     0.772
Psta_3231
SMART: PDZ/DHR/GLGF domain protein; KEGG: ajs:Ajs_0784 peptidase S1 and S6, chymotrypsin/Hap.
 
    
0.753
Psta_3230
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: gsu:GSU0080 protease DegQ.
 
    
0.676
Psta_3418
PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: dar:Daro_2024 peptidase S1C, Do.
 
   0.658
Psta_3206
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: rce:RC1_1980 periplasmic serine protease, Do.
  
     0.630
Psta_3926
PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: ajs:Ajs_1505 peptidase S1 and S6, chymotrypsin/Hap.
  
     0.559
Psta_1729
Prenyltransferase beta subunit-like protein; KEGG: Os01g0150100; hypothetical protein.
  
     0.490
Psta_3227
Hypothetical protein; KEGG: trans-sialidase.
 
     0.478
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.