STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_3293PFAM: Substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; KEGG: xca:xccb100_0184 glycine betaine/carnitine/choline-binding ABC transporter substrate-binding and permease component. (516 aa)    
Predicted Functional Partners:
Psta_3294
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: noc:Noc_0539 ABC transporter, ATPase subunit.
 0.999
Psta_0827
KEGG: aba:Acid345_1118 hypothetical protein.
  
    0.789
Psta_3295
PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: noc:Noc_2382 phospholipid/glycerol acyltransferase.
       0.684
Psta_0870
TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: gsu:GSU3395 proline dehydrogenase/delta-1- pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
   
 0.527
Psta_1939
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0003932 probable spermidine/putrescine ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.480
Psta_0585
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bav:BAV0548 MarR-family transcriptional regulator.
  
  
 0.466
Psta_1269
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bha:BH4044 MarR family transcriptional regulator.
  
  
 0.466
Psta_1502
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: aba:Acid345_2954 transcriptional regulator, MarR family.
  
  
 0.466
Psta_1580
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: scl:sce5381 MarR family transcriptional regulator.
  
  
 0.466
Psta_1616
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: aba:Acid345_2954 transcriptional regulator, MarR family.
  
  
 0.466
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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