STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_3383PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: afw:Anae109_1437 hypothetical protein. (248 aa)    
Predicted Functional Partners:
Psta_3384
PFAM: protein of unknown function DUF162; KEGG: acp:A2cp1_3174 protein of unknown function DUF162.
 
 0.998
Psta_4614
TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: bcz:BCZK2957 iron-sulfur cluster-binding protein.
 
 0.992
Psta_3385
PFAM: protein of unknown function DUF162; KEGG: ank:AnaeK_3067 protein of unknown function DUF162.
 
 
 0.976
Psta_4615
PFAM: protein of unknown function DUF162; KEGG: bcz:BCZK2956 hypothetical protein.
 
 
 0.902
Psta_3386
KEGG: gur:Gura_0348 hypothetical protein.
       0.746
Psta_3382
Hypothetical protein.
       0.556
Psta_3381
PFAM: biopterin transport-related protein BT1; KEGG: hypothetical protein.
       0.538
Psta_1892
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: ecq:ECED1_2804 fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.466
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
       0.435
Psta_0805
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: afw:Anae109_1891 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
  
  
 0.414
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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