Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Psta_3449RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: scl:sce7130 ECF family RNA polymerase sigma factor. (204 aa)    
Predicted Functional Partners:
Psta_3450
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: scl:sce3229 protein kinase.
   
   0.778
Psta_3451
PFAM: Spore coat protein CotH; KEGG: xau:Xaut_4634 hypothetical protein.
 
     0.765
Psta_3452
KEGG: bba:Bd0821 hypothetical protein.
       0.639
Psta_3453
KEGG: bba:Bd0818 hypothetical protein.
  
    0.639
Psta_3448
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: gme:Gmet_1121 GntR family transcriptional regulator.
       0.465
Psta_3446
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_6187 hypothetical protein.
       0.464
Psta_3447
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_0974 hypothetical protein.
       0.464
Psta_0859
Putative phytochrome sensor protein; PFAM: GAF domain protein; KEGG: mgm:Mmc1_2199 membrane-fusion protein-like protein.
  
     0.403
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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