Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psta_3453KEGG: bba:Bd0818 hypothetical protein. (225 aa)    
Predicted Functional Partners:
Psta_3452
KEGG: bba:Bd0821 hypothetical protein.
 
    0.991
Psta_3451
PFAM: Spore coat protein CotH; KEGG: xau:Xaut_4634 hypothetical protein.
 
     0.937
Psta_3449
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: scl:sce7130 ECF family RNA polymerase sigma factor.
  
    0.639
Psta_3450
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: scl:sce3229 protein kinase.
       0.639
Psta_1248
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: ppd:Ppro_3226 ATPase, P-type (transporting), HAD superfamily, subfamily IC.
  
 
 0.586
Psta_0230
KEGG: pzu:PHZ_c0944 hypothetical protein.
  
     0.536
Psta_4357
PFAM: type III secretion system inner membrane R protein; KEGG: glo:Glov_3288 flagellar biosynthetic protein FliR.
    
   0.501
Psta_3454
TIGRFAM: methyltransferase FkbM family; KEGG: bmj:BMULJ_04341 putative SAM-dependent methyltransferase.
       0.449
Psta_3528
TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bch:Bcen2424_5494 heavy metal translocating P- type ATPase.
     
 0.416
Psta_1513
KEGG: oca:OCAR_5635 hypothetical protein.
 
     0.414
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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