STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_3505RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sde:Sde_1647 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)    
Predicted Functional Partners:
Psta_3503
PFAM: Protein of unknown function DUF1592; Protein of unknown function DUF1588; Protein of unknown function DUF1587; Protein of unknown function DUF1595; protein of unknown function DUF1585; KEGG: cja:CJA_1054 hypothetical protein.
 
    0.822
Psta_3502
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_2032 hypothetical protein.
 
     0.791
Psta_1166
PFAM: FecR protein; SMART: LamG domain protein jellyroll fold domain protein; KEGG: hch:HCH_06140 hypothetical protein.
  
   0.751
Psta_2515
PFAM: lipolytic protein G-D-S-L family; KEGG: predicted protein.
  
     0.729
Psta_3531
PFAM: peptidase domain protein; KEGG: sus:Acid_3763 peptidase domain-containing protein.
  
     0.722
Psta_3499
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_0842 hypothetical protein.
 
     0.687
Psta_2091
PFAM: peptidase domain protein; KEGG: sus:Acid_5040 hypothetical protein.
  
     0.684
Psta_3500
PFAM: Protein of unknown function DUF1592; Protein of unknown function DUF1588; Protein of unknown function DUF1587; Protein of unknown function DUF1595; protein of unknown function DUF1585; KEGG: sus:Acid_2031 hypothetical protein.
 
    0.676
Psta_3533
PFAM: protein of unknown function DUF1549; Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; KEGG: sus:Acid_5709 hypothetical protein.
  
     0.660
Psta_2092
PFAM: protein of unknown function DUF1549; Ig domain protein group 2 domain protein; KEGG: sus:Acid_5039 hypothetical protein.
  
     0.657
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.