STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_3506PFAM: beta-lactamase; KEGG: aba:Acid345_0999 beta-lactamase. (559 aa)    
Predicted Functional Partners:
Psta_3469
PFAM: beta-lactamase; KEGG: aba:Acid345_2615 uncharacterised conserved protein UCP016719.
  
     0.710
Psta_1605
PFAM: beta-lactamase; KEGG: aba:Acid345_2615 uncharacterised conserved protein UCP016719.
  
     0.652
Psta_2720
KEGG: similar to KIAA1398 protein.
  
     0.441
Psta_2698
SMART: Pyrrolo-quinoline quinone; KEGG: sus:Acid_1077 alpha/beta hydrolase domain- containing protein.
  
     0.436
Psta_1396
PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: dno:DNO_0576 hypothetical protein.
 
     0.428
Psta_2518
KEGG: lpf:lpl1621 hypothetical protein.
  
   
 0.414
Psta_1647
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Peptidoglycan-binding domain 1 protein; beta-lactamase; KEGG: hypothetical protein.
     
 0.410
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.