Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_3531PFAM: peptidase domain protein; KEGG: sus:Acid_3763 peptidase domain-containing protein. (1028 aa)    
Predicted Functional Partners:
Psta_3533
PFAM: protein of unknown function DUF1549; Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; KEGG: sus:Acid_5709 hypothetical protein.
 
     0.879
Psta_0349
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_5708 hypothetical protein.
 
     0.784
Psta_3862
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein.
  
     0.763
Psta_3095
Hypothetical protein; KEGG: nmu:Nmul_A2303 peptidase S9, prolyl oligopeptidase active site region.
  
     0.761
Psta_2382
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein.
  
     0.759
Psta_0622
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_5708 hypothetical protein.
  
     0.757
Psta_1650
FOG: WD40 repeat-like protein; KEGG: swi:Swit_3125 pyrrolo-quinoline quinone.
  
     0.753
Psta_3066
KEGG: bba:Bd2031 putative lipoprotein.
  
     0.753
Psta_0754
SMART: Pyrrolo-quinoline quinone; KEGG: sec:SC2517 outer membrane protein assembly complex subunit YfgL.
  
     0.752
Psta_3818
SMART: Pyrrolo-quinoline quinone; KEGG: ade:Adeh_1656 PQQ repeat-containing protein.
  
     0.752
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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