Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_3584PFAM: type II and III secretion system protein; transport-associated; KEGG: sfu:Sfum_1493 type II and III secretion system protein; Belongs to the bacterial secretin family. (940 aa)    
Predicted Functional Partners:
Psta_2075
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: rme:Rmet_0648 Flp pilus assembly CpaB.
 
  
 0.907
Psta_0128
PFAM: type II secretion system protein; KEGG: bte:BTH_II2275 Flp pilus assembly protein TadB.
 
  
 0.832
Psta_0127
PFAM: type II secretion system protein; KEGG: bpl:BURPS1106A_A2968 type II secretion system protein.
 
  
 0.830
Psta_1432
PFAM: type II secretion system protein; KEGG: pca:Pcar_1754 Flp pilus assembly protein TadC.
 
  
 0.830
Psta_1433
PFAM: type II secretion system protein; KEGG: pca:Pcar_1753 Flp pilus assembly protein TadB.
 
  
 0.827
Psta_1076
PFAM: type II secretion system protein; KEGG: sus:Acid_1414 type II secretion system protein.
 
  
 0.826
Psta_1077
PFAM: type II secretion system protein; KEGG: rpi:Rpic_0587 type II secretion system protein.
 
  
 0.824
Psta_1191
Response regulator receiver protein; KEGG: pca:Pcar_1751 Flp pilus assembly ATPase CpaE.
 
  
 0.816
Psta_2077
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ppd:Ppro_2701 response regulator receiver protein.
 
  
 0.811
Psta_1189
PFAM: type II secretion system protein; KEGG: bpy:Bphyt_6877 type II secretion system protein.
 
  
 0.809
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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