Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_3753RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: ccs:CCNA_01721 RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. (197 aa)    
Predicted Functional Partners:
Psta_3752
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein.
 
     0.635
Psta_2061
PFAM: Cna B domain protein; KEGG: gme:Gmet_2043 hypothetical protein.
  
     0.566
Psta_2522
PFAM: membrane-flanked domain; KEGG: scl:sce0976 hypothetical protein.
  
    0.555
Psta_4263
KEGG: sus:Acid_4290 hypothetical protein.
  
     0.505
Psta_2713
PFAM: extracellular solute-binding protein family 5; KEGG: atc:AGR_pTi_257 agrocinopine utilization periplasmic binding protein AccA precursor.
  
     0.499
Psta_3611
KEGG: hypothetical protein.
  
     0.492
Psta_3751
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_5708 hypothetical protein.
 
     0.487
Psta_4192
PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: rme:Rmet_4377 phospholipid/glycerol acyltransferase.
  
     0.452
Psta_1934
PFAM: peptidase domain protein; cellulosome protein dockerin type I; KEGG: eli:ELI_06165 hypothetical protein.
  
     0.421
Psta_3620
Hypothetical protein; KEGG: reh:H16_B0247 filamentous hemagglutinin / adhesin.
  
     0.420
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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