Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_3759PFAM: protein of unknown function DUF1080; KEGG: sml:Smlt1191 hypothetical protein. (437 aa)    
Predicted Functional Partners:
Psta_3882
Hypothetical protein; KEGG: rme:Rmet_0747 putative membrane-bound dehydrogenase oxidoreductase protein.
 
     0.952
Psta_1172
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.
  
     0.771
Psta_2463
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_0701 hypothetical protein.
  
     0.770
Psta_3568
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.
  
     0.769
Psta_3817
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_0701 hypothetical protein.
  
     0.767
Psta_0855
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_6142 hypothetical protein.
  
     0.766
Psta_4238
PFAM: protein of unknown function DUF1080; KEGG: bbt:BBta_1648 hypothetical protein.
  
     0.765
Psta_4293
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_6296 oxidoreductase domain- containing protein.
  
     0.737
Psta_3527
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_7533 xylose isomerase domain- containing protein; Belongs to the hyi family.
 
     0.722
Psta_3792
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.
  
     0.722
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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