STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_3792PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein. (226 aa)    
Predicted Functional Partners:
Psta_1928
TIGRFAM: heme-binding protein; PFAM: alpha-L-rhamnosidase domain protein; KEGG: bba:Bd0989 L-sorbosone dehydrogenase.
 
     0.951
Psta_3475
TIGRFAM: heme-binding protein; KEGG: aba:Acid345_0291 cytochrome c, class I.
 
     0.934
Psta_2425
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_2605 hypothetical protein.
 
     0.882
Psta_4373
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_2457 hypothetical protein.
  
     0.772
Psta_3817
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_0701 hypothetical protein.
  
     0.765
Psta_1344
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_4919 hypothetical protein.
  
     0.761
Psta_4238
PFAM: protein of unknown function DUF1080; KEGG: bbt:BBta_1648 hypothetical protein.
  
     0.759
Psta_3978
PFAM: major facilitator superfamily MFS_1; KEGG: swi:Swit_1636 major facilitator transporter.
  
     0.758
Psta_3370
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_2550 oxidoreductase domain- containing protein.
  
     0.748
Psta_0703
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rde:RD1_3874 hypothetical protein.
  
     0.738
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.