Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psta_3841PFAM: polysaccharide deacetylase; KEGG: ecf:ECH74115_B0111 polysaccharide deacetylase family protein. (331 aa)    
Predicted Functional Partners:
Psta_3839
PFAM: O-antigen polymerase; KEGG: O-antigen polymerase.
     
 0.656
Psta_3840
PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: mno:Mnod_5602 hypothetical protein.
     
 0.643
Psta_3838
PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_1076 glycosyl transferase family 2.
  
    0.508
Psta_3842
PFAM: lipopolysaccharide biosynthesis protein; KEGG: ppd:Ppro_2880 lipopolysaccharide biosynthesis.
       0.469
Psta_1647
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Peptidoglycan-binding domain 1 protein; beta-lactamase; KEGG: hypothetical protein.
 
   
 0.467
Psta_3836
KEGG: mmr:Mmar10_1683 cellulose biosynthetic (CelD)-like protein.
     
 0.416
Psta_3837
KEGG: mmr:Mmar10_0440 hypothetical protein.
     
 0.416
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.