Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_3949KEGG: sus:Acid_4453 transmembrane prediction; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (450 aa)    
Predicted Functional Partners:
Psta_2382
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein.
  
     0.755
Psta_2091
PFAM: peptidase domain protein; KEGG: sus:Acid_5040 hypothetical protein.
  
     0.743
Psta_0197
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_5708 hypothetical protein.
  
     0.724
Psta_1408
Glucuronate isomerase-like protein; KEGG: hypothetical protein.
 
   
 0.722
Psta_2092
PFAM: protein of unknown function DUF1549; Ig domain protein group 2 domain protein; KEGG: sus:Acid_5039 hypothetical protein.
  
     0.706
Psta_0040
PFAM: FG-GAP repeat protein; KEGG: sus:Acid_2424 FG-GAP repeat-containing protein.
  
     0.701
Psta_3492
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_1244 hypothetical protein.
  
     0.700
Psta_0403
Hypothetical protein; KEGG: shn:Shewana3_1693 putative signal peptide protein.
  
    0.697
Psta_4283
PFAM: protein of unknown function DUF1549; Ig domain protein group 2 domain protein; KEGG: sus:Acid_5039 hypothetical protein.
  
     0.696
Psta_2383
PFAM: Planctomycete cytochrome C; SMART: WD-40 repeat protein; KEGG: sus:Acid_5710 WD-40 repeat-containing protein.
  
     0.685
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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