STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xseBExonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (127 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
  
 0.999
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
   
    0.736
Psta_3971
PFAM: Polyprenyl synthetase; KEGG: pca:Pcar_1668 geranyltranstransferase (farnesyldiphosphate synthase); Belongs to the FPP/GGPP synthase family.
  
  
 0.733
dxs
Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
     
 0.585
Psta_0175
PFAM: protein of unknown function DUF116; Polyprenyl synthetase; KEGG: lch:Lcho_3278 polyprenyl synthetase.
  
  
 0.557
Psta_3133
PFAM: Polyprenyl synthetase; KEGG: glo:Glov_2277 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
  
 0.519
Psta_3989
TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: acr:Acry_1182 preprotein translocase, YajC subunit.
  
  
 0.495
Psta_3555
RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
   0.487
Psta_0449
PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: tmz:Tmz1t_2154 resolvase domain protein.
  
    0.463
Psta_4402
PFAM: ExsB family protein; KEGG: sus:Acid_3974 ExsB family protein.
   
    0.448
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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