Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Psta_4002PFAM: Ferritin Dps family protein; KEGG: bcb:BCB4264_A1034 hypothetical protein. (152 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.917
Psta_4709
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: hypothetical protein; K00362 nitrite reductase (NAD(P)H) large subunit.
  
 
 0.862
Psta_0827
KEGG: aba:Acid345_1118 hypothetical protein.
  
  
 0.813
Psta_0054
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pca:Pcar_1874 anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family.
   
  
 0.622
Psta_0469
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dvl:Dvul_2983 anti-sigma-factor antagonist.
   
  
 0.622
Psta_3468
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_1719 anti-anti-sigma regulatory factor, SpoIIAA.
   
  
 0.622
Psta_3637
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dal:Dalk_0884 anti-sigma-factor antagonist.
   
  
 0.622
Psta_1207
KEGG: pfl:PFL_4401 hypothetical protein.
  
  
 0.439
Psta_1613
PFAM: Ferritin Dps family protein; KEGG: gbe:GbCGDNIH1_0685 DNA starvation/stationary phase protection protein Dps; Belongs to the Dps family.
   
  
 0.424
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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